IL_3J29_027

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J29_027 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.2782

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J29|1|N|G|446
3J29|1|N|G|447
3J29|1|N|A|448
3J29|1|N|G|449
3J29|1|N|G|450
*
3J29|1|N|C|483
3J29|1|N|G|484
3J29|1|N|U|485
3J29|1|N|U|486
3J29|1|N|A|487
3J29|1|N|C|488

Current chains

Chain N

16S rRNA

Nearby chains