IL_3J29_031

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J29_031 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.2821

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

3J29|1|N|C|504
3J29|1|N|G|505
3J29|1|N|G|506
3J29|1|N|C|507
3J29|1|N|U|508
3J29|1|N|A|509
3J29|1|N|A|510
3J29|1|N|C|511
*
3J29|1|N|G|540
3J29|1|N|G|541

Current chains

Chain N

16S rRNA

Nearby chains