IL_3J29_033

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

GCGUAAAG*CGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J29_033 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3284

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

3J29|1|N|G|568
3J29|1|N|C|569
3J29|1|N|G|570
3J29|1|N|U|571
3J29|1|N|A|572
3J29|1|N|A|573
3J29|1|N|A|574
3J29|1|N|G|575
*
3J29|1|N|C|880
3J29|1|N|G|881
3J29|1|N|C|882

Current chains

Chain N

16S rRNA

Nearby chains