3D structure

PDB id
3J2A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM
Experimental method
ELECTRON MICROSCOPY
Resolution
13.1 Å

Loop

Sequence
UG*UGA
Length
5 nucleotides
Bulged bases
3J2A|1|N|G|388
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J2A_020 not in the Motif Atlas
Homologous match to IL_4LFB_016
Geometric discrepancy: 0.3863
The information below is about IL_4LFB_016
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

3J2A|1|N|U|375
3J2A|1|N|G|376
*
3J2A|1|N|U|387
3J2A|1|N|G|388
3J2A|1|N|A|389

Current chains

Chain N
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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