3J2A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J2A_001 | No text annotation | ||
| HL_3J2A_002 | No text annotation | ||
| HL_3J2A_003 | GNRA | ||
| HL_3J2A_004 | GNRA | ||
| HL_3J2A_005 | No text annotation | ||
| HL_3J2A_006 | No text annotation | ||
| HL_3J2A_007 | GNRA | ||
| HL_3J2A_008 | No text annotation | ||
| HL_3J2A_009 | UNCG | ||
| HL_3J2A_010 | GNRA | ||
| HL_3J2A_011 | No text annotation | ||
| HL_3J2A_033 | No text annotation | ||
| HL_3J2A_012 | No text annotation | ||
| HL_3J2A_036 | No text annotation | ||
| HL_3J2A_013 | No text annotation | ||
| HL_3J2A_014 | GNRA-like with tWH | ||
| HL_3J2A_015 | No text annotation | ||
| HL_3J2A_016 | GNRA | ||
| HL_3J2A_034 | No text annotation | ||
| HL_3J2A_017 | No text annotation | ||
| HL_3J2A_018 | No text annotation | ||
| HL_3J2A_019 | GNRA | ||
| HL_3J2A_020 | GNRA | ||
| HL_3J2A_035 | No text annotation | ||
| HL_3J2A_021 | No text annotation | ||
| HL_3J2A_022 | GNRA | ||
| HL_3J2A_023 | No text annotation | ||
| HL_3J2A_024 | GNRA | ||
| HL_3J2A_025 | No text annotation | ||
| HL_3J2A_026 | No text annotation | ||
| HL_3J2A_027 | GNRA | ||
| HL_3J2A_028 | GNRA | ||
| HL_3J2A_029 | T-loop with 2 stacked bulged bases | ||
| HL_3J2A_030 | No text annotation | ||
| HL_3J2A_031 | UNCG | ||
| HL_3J2A_032 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J2A_001 | Single bulged G | ||
| IL_3J2A_002 | Isolated non-canonical cWW pair | ||
| IL_3J2A_073 | Single bulged A | ||
| IL_3J2A_003 | No text annotation | ||
| IL_3J2A_004 | Minor groove platform | ||
| IL_3J2A_005 | Isolated non-canonical cWW pair | ||
| IL_3J2A_006 | Multiple bulged bases | ||
| IL_3J2A_007 | Minor groove platform with extra cWW | ||
| IL_3J2A_008 | Minor groove platform | ||
| IL_3J2A_074 | No text annotation | ||
| IL_3J2A_009 | No text annotation | ||
| IL_3J2A_010 | No text annotation | ||
| IL_3J2A_011 | Isolated cWH basepair | ||
| IL_3J2A_012 | tWH-tWH-tHW-tHW | ||
| IL_3J2A_013 | Isolated non-canonical cWW pair | ||
| IL_3J2A_014 | No text annotation | ||
| IL_3J2A_015 | Kink-turn with non-sequential stacking | ||
| IL_3J2A_075 | No text annotation | ||
| IL_3J2A_016 | No text annotation | ||
| IL_3J2A_017 | No text annotation | ||
| IL_3J2A_018 | Isolated non-canonical cWW pair | ||
| IL_3J2A_019 | No text annotation | ||
| IL_3J2A_086 | C-loop | ||
| IL_3J2A_020 | Single bulged G | ||
| IL_3J2A_021 | Isolated non-canonical cWW pair | ||
| IL_3J2A_022 | No text annotation | ||
| IL_3J2A_076 | No text annotation | ||
| IL_3J2A_077 | No text annotation | ||
| IL_3J2A_023 | tSH-tHW-tWW | ||
| IL_3J2A_024 | No text annotation | ||
| IL_3J2A_025 | SSU/LSU pseudoknot | ||
| IL_3J2A_026 | No text annotation | ||
| IL_3J2A_087 | No text annotation | ||
| IL_3J2A_078 | Tandem non-canonical cWW pairs | ||
| IL_3J2A_027 | No text annotation | ||
| IL_3J2A_028 | tSH-tHW-tHS | ||
| IL_3J2A_029 | Major groove platform | ||
| IL_3J2A_030 | Major groove minor groove platform; mini C-loop | ||
| IL_3J2A_031 | No text annotation | ||
| IL_3J2A_079 | No text annotation | ||
| IL_3J2A_032 | Major groove platform; stack outside cWW | ||
| IL_3J2A_033 | No text annotation | ||
| IL_3J2A_034 | Single stack bend | ||
| IL_3J2A_035 | Isolated non-canonical cWW pair | ||
| IL_3J2A_036 | Tandem non-canonical cWW pairs | ||
| IL_3J2A_037 | Kink-turn | ||
| IL_3J2A_038 | No text annotation | ||
| IL_3J2A_039 | No text annotation | ||
| IL_3J2A_040 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3J2A_080 | Isolated non-canonical cWW pair | ||
| IL_3J2A_041 | Isolated non-canonical cWW pair | ||
| IL_3J2A_042 | Isolated non-canonical cWW pair | ||
| IL_3J2A_081 | Tandem non-canonical cWW pairs | ||
| IL_3J2A_043 | Minor groove platform | ||
| IL_3J2A_044 | No text annotation | ||
| IL_3J2A_045 | Isolated non-canonical cWW pair | ||
| IL_3J2A_046 | Minor groove platform | ||
| IL_3J2A_082 | No text annotation | ||
| IL_3J2A_047 | Single stack bend | ||
| IL_3J2A_048 | No text annotation | ||
| IL_3J2A_049 | Single bulged U | ||
| IL_3J2A_050 | Isolated cWS basepair | ||
| IL_3J2A_051 | Minor groove platform | ||
| IL_3J2A_052 | Single bulged U | ||
| IL_3J2A_053 | Isolated non-canonical cWW pair | ||
| IL_3J2A_054 | No text annotation | ||
| IL_3J2A_055 | No text annotation | ||
| IL_3J2A_056 | Minor groove platform | ||
| IL_3J2A_088 | No text annotation | ||
| IL_3J2A_057 | No text annotation | ||
| IL_3J2A_058 | No text annotation | ||
| IL_3J2A_059 | 180 degree turn | ||
| IL_3J2A_060 | Double sheared with non-canonical cWW | ||
| IL_3J2A_061 | Isolated cWH basepair | ||
| IL_3J2A_062 | No text annotation | ||
| IL_3J2A_063 | Isolated non-canonical cWW pair | ||
| IL_3J2A_064 | No text annotation | ||
| IL_3J2A_065 | Isolated non-canonical cWW pair | ||
| IL_3J2A_083 | Partly complementary | ||
| IL_3J2A_066 | No text annotation | ||
| IL_3J2A_067 | Isolated non-canonical cWW pair | ||
| IL_3J2A_068 | Double sheared | ||
| IL_3J2A_084 | No text annotation | ||
| IL_3J2A_069 | Triple sheared related | ||
| IL_3J2A_070 | Isolated non-canonical cWW pair | ||
| IL_3J2A_089 | Single bulged A | ||
| IL_3J2A_071 | Minor groove platform with extra cWW | ||
| IL_3J2A_085 | No text annotation | ||
| IL_3J2A_072 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J2A_013 | No text annotation | ||
| J3_3J2A_001 | No text annotation | ||
| J3_3J2A_014 | No text annotation | ||
| J3_3J2A_021 | No text annotation | ||
| J3_3J2A_022 | No text annotation | ||
| J3_3J2A_015 | No text annotation | ||
| J3_3J2A_002 | No text annotation | ||
| J3_3J2A_003 | No text annotation | ||
| J3_3J2A_004 | No text annotation | ||
| J3_3J2A_023 | No text annotation | ||
| J3_3J2A_016 | No text annotation | ||
| J3_3J2A_005 | No text annotation | ||
| J3_3J2A_006 | No text annotation | ||
| J3_3J2A_024 | No text annotation | ||
| J3_3J2A_017 | No text annotation | ||
| J3_3J2A_007 | No text annotation | ||
| J3_3J2A_025 | No text annotation | ||
| J3_3J2A_018 | No text annotation | ||
| J3_3J2A_026 | No text annotation | ||
| J3_3J2A_008 | No text annotation | ||
| J3_3J2A_019 | No text annotation | ||
| J3_3J2A_012 | No text annotation | ||
| J3_3J2A_009 | No text annotation | ||
| J3_3J2A_027 | No text annotation | ||
| J3_3J2A_020 | No text annotation | ||
| J3_3J2A_010 | No text annotation | ||
| J4_3J2A_001 | No text annotation | ||
| J4_3J2A_004 | No text annotation | ||
| J4_3J2A_002 | No text annotation | ||
| J4_3J2A_003 | No text annotation | ||
| J5_3J2A_001 | No text annotation | ||
| J5_3J2A_002 | No text annotation | ||
| J5_3J2A_003 | No text annotation |
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