IL_3J2B_025

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2B_025 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.3231

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J2B|1|N|G|446
3J2B|1|N|G|447
3J2B|1|N|A|448
3J2B|1|N|G|449
3J2B|1|N|G|450
*
3J2B|1|N|C|483
3J2B|1|N|G|484
3J2B|1|N|U|485
3J2B|1|N|U|486
3J2B|1|N|A|487
3J2B|1|N|C|488

Current chains

Chain N

16S rRNA

Nearby chains