IL_3J2B_062

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

3J2B|1|N|U|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2B_062 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.2523

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

3J2B|1|N|C|1158
3J2B|1|N|U|1159
3J2B|1|N|G|1160
3J2B|1|N|C|1161
*
3J2B|1|N|G|1175
3J2B|1|N|A|1176
3J2B|1|N|G|1177
3J2B|1|N|G|1178
3J2B|1|N|A|1179
3J2B|1|N|A|1180
3J2B|1|N|G|1181

Current chains

Chain N

16S rRNA

Nearby chains