IL_3J2B_084

3D structure

PDB id

3J2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

3J2B|1|N|A|412, 3J2B|1|N|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2B_084 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.4556

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

3J2B|1|N|U|409
3J2B|1|N|G|410
3J2B|1|N|A|411
3J2B|1|N|A|412
3J2B|1|N|G|413
3J2B|1|N|A|414
3J2B|1|N|A|415
3J2B|1|N|G|416
*
3J2B|1|N|U|427
3J2B|1|N|G|428
3J2B|1|N|U|429
3J2B|1|N|A|430
3J2B|1|N|A|431
3J2B|1|N|A|432
3J2B|1|N|G|433

Current chains

Chain N

16S rRNA

Nearby chains