IL_3J2C_047

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2C_047 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.3711

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3J2C|1|N|G|446
3J2C|1|N|G|447
3J2C|1|N|A|448
3J2C|1|N|G|449
3J2C|1|N|G|450
*
3J2C|1|N|C|483
3J2C|1|N|G|484
3J2C|1|N|U|485
3J2C|1|N|U|486
3J2C|1|N|A|487
3J2C|1|N|C|488

Current chains

Chain N

16S rRNA body domain

Nearby chains