IL_3J2C_051

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2C_051 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.2311

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

3J2C|1|N|C|504
3J2C|1|N|G|505
3J2C|1|N|G|506
3J2C|1|N|C|507
3J2C|1|N|U|508
3J2C|1|N|A|509
3J2C|1|N|A|510
3J2C|1|N|C|511
*
3J2C|1|N|G|540
3J2C|1|N|G|541

Current chains

Chain N

16S rRNA body domain

Nearby chains