IL_3J2C_075

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GUA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2C_075 not in the Motif Atlas

Geometric match to IL_2ZKO_001

Geometric discrepancy: 0.1831

The information below is about IL_2ZKO_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

3J2C|1|O|G|1511
3J2C|1|O|U|1512
3J2C|1|O|A|1513
*
3J2C|1|O|U|1522
3J2C|1|O|G|1523
3J2C|1|O|C|1524

Current chains

Chain O

16S rRNA body domain

Nearby chains

Chain N

Small subunit ribosomal RNA; SSU rRNA