IL_3J2C_085

3D structure

PDB id

3J2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

3J2C|1|N|A|412, 3J2C|1|N|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2C_085 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.4432

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

3J2C|1|N|U|409
3J2C|1|N|G|410
3J2C|1|N|A|411
3J2C|1|N|A|412
3J2C|1|N|G|413
3J2C|1|N|A|414
3J2C|1|N|A|415
3J2C|1|N|G|416
*
3J2C|1|N|U|427
3J2C|1|N|G|428
3J2C|1|N|U|429
3J2C|1|N|A|430
3J2C|1|N|A|431
3J2C|1|N|A|432
3J2C|1|N|G|433

Current chains

Chain N

16S rRNA body domain

Nearby chains