IL_3J2D_010

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2D_010 not in the Motif Atlas

Geometric match to IL_1ZZ5_002

Geometric discrepancy: 0.3326

The information below is about IL_1ZZ5_002

Detailed Annotation

UU cWW

Broad Annotation

Isolated non-canonical cWW

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

3J2D|1|N|U|140
3J2D|1|N|G|141
3J2D|1|N|G|142
*
3J2D|1|N|C|221
3J2D|1|N|C|222
3J2D|1|N|A|223

Current chains

Chain N

16S rRNA

Nearby chains