IL_3J2D_019

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

3J2D|1|N|U|368

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2D_019 not in the Motif Atlas

Geometric match to IL_5TBW_130

Geometric discrepancy: 0.3767

The information below is about IL_5TBW_130

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3J2D|1|N|U|367
3J2D|1|N|U|368
3J2D|1|N|G|369
*
3J2D|1|N|C|392
3J2D|1|N|A|393

Current chains

Chain N

16S rRNA

Nearby chains