IL_3J2D_034

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2D_034 not in the Motif Atlas

Homologous match to IL_5J7L_028

Geometric discrepancy: 0.4521

The information below is about IL_5J7L_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

3J2D|1|N|U|594
3J2D|1|N|A|595
3J2D|1|N|A|596
*
3J2D|1|N|U|644
3J2D|1|N|G|645

Current chains

Chain N

16S rRNA

Nearby chains