IL_3J2D_056

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

UGGC*GUCAUCA

Length

11 nucleotides

Bulged bases

3J2D|1|N|C|1200, 3J2D|1|N|A|1201

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2D_056 not in the Motif Atlas

Geometric match to IL_3BNT_002

Geometric discrepancy: 0.3286

The information below is about IL_3BNT_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_60988.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

3J2D|1|N|U|1056
3J2D|1|N|G|1057
3J2D|1|N|G|1058
3J2D|1|N|C|1059
*
3J2D|1|N|G|1198
3J2D|1|N|U|1199
3J2D|1|N|C|1200
3J2D|1|N|A|1201
3J2D|1|N|U|1202
3J2D|1|N|C|1203
3J2D|1|N|A|1204

Current chains

Chain N

16S rRNA

Nearby chains