IL_3J2D_080

3D structure

PDB id

3J2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.7 Å

Loop

Sequence

GGCGUAAAG*CGCC

Length

13 nucleotides

Bulged bases

3J2D|1|N|A|572, 3J2D|1|N|A|573, 3J2D|1|N|A|574

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2D_080 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.3411

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

3J2D|1|N|G|567
3J2D|1|N|G|568
3J2D|1|N|C|569
3J2D|1|N|G|570
3J2D|1|N|U|571
3J2D|1|N|A|572
3J2D|1|N|A|573
3J2D|1|N|A|574
3J2D|1|N|G|575
*
3J2D|1|N|C|880
3J2D|1|N|G|881
3J2D|1|N|C|882
3J2D|1|N|C|883

Current chains

Chain N

16S rRNA

Nearby chains