IL_3J2E_091

3D structure

PDB id

3J2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

15.3 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

3J2E|1|N|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2E_091 not in the Motif Atlas

Geometric match to IL_4P3U_007

Geometric discrepancy: 0.3629

The information below is about IL_4P3U_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

3J2E|1|N|U|921
3J2E|1|N|G|922
3J2E|1|N|A|923
*
3J2E|1|N|U|1393
3J2E|1|N|A|1394
3J2E|1|N|C|1395
3J2E|1|N|A|1396

Current chains

Chain N

16S rRNA

Nearby chains