3J2E Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J2E_001 | No text annotation | ||
| HL_3J2E_002 | No text annotation | ||
| HL_3J2E_003 | GNRA | ||
| HL_3J2E_004 | GNRA | ||
| HL_3J2E_005 | No text annotation | ||
| HL_3J2E_006 | No text annotation | ||
| HL_3J2E_037 | GNRA related | ||
| HL_3J2E_007 | GNRA | ||
| HL_3J2E_008 | No text annotation | ||
| HL_3J2E_009 | UNCG | ||
| HL_3J2E_010 | GNRA | ||
| HL_3J2E_011 | Externally structured | ||
| HL_3J2E_012 | No text annotation | ||
| HL_3J2E_033 | No text annotation | ||
| HL_3J2E_038 | No text annotation | ||
| HL_3J2E_013 | No text annotation | ||
| HL_3J2E_014 | GNRA-like with tWH | ||
| HL_3J2E_015 | No text annotation | ||
| HL_3J2E_016 | GNRA | ||
| HL_3J2E_034 | No text annotation | ||
| HL_3J2E_017 | No text annotation | ||
| HL_3J2E_018 | No text annotation | ||
| HL_3J2E_035 | GNRA with extra near cWW | ||
| HL_3J2E_019 | GNRA | ||
| HL_3J2E_020 | GNRA | ||
| HL_3J2E_021 | No text annotation | ||
| HL_3J2E_039 | No text annotation | ||
| HL_3J2E_022 | GNRA | ||
| HL_3J2E_023 | No text annotation | ||
| HL_3J2E_024 | GNRA | ||
| HL_3J2E_036 | No text annotation | ||
| HL_3J2E_025 | No text annotation | ||
| HL_3J2E_026 | No text annotation | ||
| HL_3J2E_027 | GNRA | ||
| HL_3J2E_028 | GNRA | ||
| HL_3J2E_029 | T-loop with 3 stacked bulged bases | ||
| HL_3J2E_030 | No text annotation | ||
| HL_3J2E_031 | UNCG | ||
| HL_3J2E_032 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J2E_001 | Single bulged G | ||
| IL_3J2E_002 | Single bulged A | ||
| IL_3J2E_003 | No text annotation | ||
| IL_3J2E_004 | Minor groove platform | ||
| IL_3J2E_005 | Isolated non-canonical cWW pair | ||
| IL_3J2E_006 | Multiple bulged bases | ||
| IL_3J2E_007 | Minor groove platform with extra cWW | ||
| IL_3J2E_008 | Minor groove platform | ||
| IL_3J2E_078 | No text annotation | ||
| IL_3J2E_009 | No text annotation | ||
| IL_3J2E_088 | No text annotation | ||
| IL_3J2E_010 | No text annotation | ||
| IL_3J2E_011 | Isolated non-canonical cWW pair | ||
| IL_3J2E_012 | Isolated cWH basepair | ||
| IL_3J2E_013 | tWH-tWH-tHW-tHW | ||
| IL_3J2E_014 | Isolated non-canonical cWW pair | ||
| IL_3J2E_015 | No text annotation | ||
| IL_3J2E_016 | Kink-turn with non-sequential stacking | ||
| IL_3J2E_089 | No text annotation | ||
| IL_3J2E_017 | No text annotation | ||
| IL_3J2E_018 | No text annotation | ||
| IL_3J2E_019 | Isolated non-canonical cWW pair | ||
| IL_3J2E_020 | Single bulged U | ||
| IL_3J2E_021 | No text annotation | ||
| IL_3J2E_079 | C-loop | ||
| IL_3J2E_022 | Single bulged G | ||
| IL_3J2E_023 | Isolated cWH basepair | ||
| IL_3J2E_024 | No text annotation | ||
| IL_3J2E_080 | No text annotation | ||
| IL_3J2E_025 | No text annotation | ||
| IL_3J2E_026 | tSH-tHW-tWW | ||
| IL_3J2E_027 | No text annotation | ||
| IL_3J2E_028 | Isolated non-canonical cWW pair | ||
| IL_3J2E_029 | SSU/LSU pseudoknot | ||
| IL_3J2E_030 | No text annotation | ||
| IL_3J2E_031 | Isolated non-canonical cWW pair | ||
| IL_3J2E_090 | No text annotation | ||
| IL_3J2E_032 | tSH-tHW-tHS | ||
| IL_3J2E_034 | Major groove platform | ||
| IL_3J2E_035 | Major groove minor groove platform; mini C-loop | ||
| IL_3J2E_036 | Stack and bulge | ||
| IL_3J2E_037 | No text annotation | ||
| IL_3J2E_038 | Major groove platform; stack outside cWW | ||
| IL_3J2E_039 | Single stack bend | ||
| IL_3J2E_040 | Not an internal loop | ||
| IL_3J2E_041 | Tandem non-canonical cWW pairs | ||
| IL_3J2E_042 | Triple non-canonical cWW pairs | ||
| IL_3J2E_043 | Kink-turn | ||
| IL_3J2E_081 | No text annotation | ||
| IL_3J2E_044 | No text annotation | ||
| IL_3J2E_082 | No text annotation | ||
| IL_3J2E_045 | tSH-tHW-tHS | ||
| IL_3J2E_046 | Isolated cWH basepair | ||
| IL_3J2E_047 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3J2E_091 | Isolated non-canonical cWW pair | ||
| IL_3J2E_083 | Tandem non-canonical cWW pairs | ||
| IL_3J2E_048 | No text annotation | ||
| IL_3J2E_049 | Minor groove platform | ||
| IL_3J2E_050 | Tandem non-canonical cWW pairs | ||
| IL_3J2E_051 | Minor groove platform | ||
| IL_3J2E_084 | No text annotation | ||
| IL_3J2E_052 | Single stack bend | ||
| IL_3J2E_053 | No text annotation | ||
| IL_3J2E_054 | Single bulged U | ||
| IL_3J2E_055 | Isolated cWS basepair | ||
| IL_3J2E_056 | Minor groove platform | ||
| IL_3J2E_057 | Single bulged A | ||
| IL_3J2E_058 | Isolated non-canonical cWW pair | ||
| IL_3J2E_059 | Isolated non-canonical cWW pair | ||
| IL_3J2E_060 | No text annotation | ||
| IL_3J2E_061 | No text annotation | ||
| IL_3J2E_062 | Minor groove platform | ||
| IL_3J2E_063 | No text annotation | ||
| IL_3J2E_064 | No text annotation | ||
| IL_3J2E_085 | No text annotation | ||
| IL_3J2E_065 | 180 degree turn | ||
| IL_3J2E_066 | Double sheared with non-canonical cWW | ||
| IL_3J2E_067 | Isolated non-canonical cWW pair | ||
| IL_3J2E_068 | No text annotation | ||
| IL_3J2E_069 | No text annotation | ||
| IL_3J2E_070 | No text annotation | ||
| IL_3J2E_071 | Other IL | ||
| IL_3J2E_072 | Isolated non-canonical cWW pair | ||
| IL_3J2E_086 | No text annotation | ||
| IL_3J2E_073 | No text annotation | ||
| IL_3J2E_074 | Double sheared | ||
| IL_3J2E_075 | Triple sheared related | ||
| IL_3J2E_076 | Single bulged A | ||
| IL_3J2E_087 | No text annotation | ||
| IL_3J2E_077 | No text annotation | ||
| IL_3J2E_092 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J2E_012 | No text annotation | ||
| J3_3J2E_001 | No text annotation | ||
| J3_3J2E_013 | No text annotation | ||
| J3_3J2E_020 | No text annotation | ||
| J3_3J2E_021 | No text annotation | ||
| J3_3J2E_010 | No text annotation | ||
| J3_3J2E_002 | No text annotation | ||
| J3_3J2E_003 | No text annotation | ||
| J3_3J2E_014 | No text annotation | ||
| J3_3J2E_015 | No text annotation | ||
| J3_3J2E_004 | No text annotation | ||
| J3_3J2E_022 | No text annotation | ||
| J3_3J2E_016 | No text annotation | ||
| J3_3J2E_005 | No text annotation | ||
| J3_3J2E_023 | No text annotation | ||
| J3_3J2E_017 | No text annotation | ||
| J3_3J2E_006 | No text annotation | ||
| J3_3J2E_007 | No text annotation | ||
| J3_3J2E_011 | No text annotation | ||
| J3_3J2E_008 | No text annotation | ||
| J3_3J2E_018 | No text annotation | ||
| J3_3J2E_019 | No text annotation | ||
| J4_3J2E_004 | No text annotation | ||
| J4_3J2E_001 | No text annotation | ||
| J4_3J2E_002 | No text annotation | ||
| J4_3J2E_005 | No text annotation | ||
| J4_3J2E_003 | No text annotation | ||
| J5_3J2E_001 | No text annotation | ||
| J5_3J2E_002 | No text annotation | ||
| J5_3J2E_003 | No text annotation |
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