IL_3J2F_018

3D structure

PDB id

3J2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

17.6 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

3J2F|1|N|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2F_018 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.5904

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3J2F|1|N|U|367
3J2F|1|N|U|368
3J2F|1|N|G|369
*
3J2F|1|N|C|392
3J2F|1|N|A|393

Current chains

Chain N

16S rRNA

Nearby chains