IL_3J2G_048

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

3J2G|1|N|G|926

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2G_048 not in the Motif Atlas

Geometric match to IL_4V88_424

Geometric discrepancy: 0.3747

The information below is about IL_4V88_424

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J2G|1|N|C|924
3J2G|1|N|G|925
3J2G|1|N|G|926
3J2G|1|N|G|927
*
3J2G|1|N|U|1390
3J2G|1|N|U|1391
3J2G|1|N|G|1392

Current chains

Chain N

16S rRNA

Nearby chains