3J2G Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J2G_001 | No text annotation | ||
| HL_3J2G_002 | No text annotation | ||
| HL_3J2G_003 | GNRA | ||
| HL_3J2G_004 | GNRA | ||
| HL_3J2G_005 | No text annotation | ||
| HL_3J2G_006 | tRNA D-loop | ||
| HL_3J2G_007 | GNRA | ||
| HL_3J2G_008 | No text annotation | ||
| HL_3J2G_009 | UNCG | ||
| HL_3J2G_010 | GNRA | ||
| HL_3J2G_011 | UNCG | ||
| HL_3J2G_033 | No text annotation | ||
| HL_3J2G_012 | No text annotation | ||
| HL_3J2G_013 | No text annotation | ||
| HL_3J2G_034 | No text annotation | ||
| HL_3J2G_014 | GNRA-like with tWH | ||
| HL_3J2G_015 | No text annotation | ||
| HL_3J2G_016 | GNRA | ||
| HL_3J2G_035 | No text annotation | ||
| HL_3J2G_017 | No text annotation | ||
| HL_3J2G_018 | No text annotation | ||
| HL_3J2G_019 | GNRA | ||
| HL_3J2G_020 | GNRA | ||
| HL_3J2G_021 | No text annotation | ||
| HL_3J2G_022 | GNRA | ||
| HL_3J2G_023 | No text annotation | ||
| HL_3J2G_024 | GNRA | ||
| HL_3J2G_025 | No text annotation | ||
| HL_3J2G_026 | No text annotation | ||
| HL_3J2G_027 | GNRA | ||
| HL_3J2G_028 | GNRA | ||
| HL_3J2G_029 | No text annotation | ||
| HL_3J2G_036 | No text annotation | ||
| HL_3J2G_030 | No text annotation | ||
| HL_3J2G_031 | UNCG | ||
| HL_3J2G_032 | GNRA variation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J2G_082 | Tandem non-canonical cWW pairs | ||
| IL_3J2G_001 | Single bulged G | ||
| IL_3J2G_002 | Isolated non-canonical cWW pair | ||
| IL_3J2G_083 | Single bulged A | ||
| IL_3J2G_003 | No text annotation | ||
| IL_3J2G_004 | Minor groove platform | ||
| IL_3J2G_005 | Isolated non-canonical cWW pair | ||
| IL_3J2G_084 | No text annotation | ||
| IL_3J2G_006 | Multiple bulged bases | ||
| IL_3J2G_007 | Minor groove platform with extra cWW | ||
| IL_3J2G_008 | Minor groove platform | ||
| IL_3J2G_085 | No text annotation | ||
| IL_3J2G_009 | No text annotation | ||
| IL_3J2G_010 | No text annotation | ||
| IL_3J2G_011 | Isolated cWH basepair | ||
| IL_3J2G_012 | tWH-tWH-tHW-tHW | ||
| IL_3J2G_013 | Isolated non-canonical cWW pair | ||
| IL_3J2G_086 | No text annotation | ||
| IL_3J2G_014 | No text annotation | ||
| IL_3J2G_015 | Kink-turn with non-sequential stacking | ||
| IL_3J2G_087 | No text annotation | ||
| IL_3J2G_016 | No text annotation | ||
| IL_3J2G_017 | No text annotation | ||
| IL_3J2G_018 | Isolated non-canonical cWW pair | ||
| IL_3J2G_019 | Single bulged U | ||
| IL_3J2G_020 | No text annotation | ||
| IL_3J2G_094 | C-loop | ||
| IL_3J2G_021 | Single bulged G | ||
| IL_3J2G_022 | Isolated non-canonical cWW pair | ||
| IL_3J2G_023 | No text annotation | ||
| IL_3J2G_024 | No text annotation | ||
| IL_3J2G_025 | tSH-tHW-tWW | ||
| IL_3J2G_026 | No text annotation | ||
| IL_3J2G_027 | Isolated non-canonical cWW pair | ||
| IL_3J2G_028 | Isolated non-canonical cWW pair | ||
| IL_3J2G_029 | SSU/LSU pseudoknot | ||
| IL_3J2G_030 | No text annotation | ||
| IL_3J2G_031 | Isolated non-canonical cWW pair | ||
| IL_3J2G_032 | tSH-tHW-tHS | ||
| IL_3J2G_033 | Self complementary | ||
| IL_3J2G_034 | Major groove platform | ||
| IL_3J2G_035 | Major groove minor groove platform; mini C-loop | ||
| IL_3J2G_036 | Stack and bulge | ||
| IL_3J2G_037 | No text annotation | ||
| IL_3J2G_038 | Major groove platform; stack outside cWW | ||
| IL_3J2G_039 | No text annotation | ||
| IL_3J2G_040 | Single stack bend | ||
| IL_3J2G_041 | Isolated non-canonical cWW pair | ||
| IL_3J2G_042 | Tandem non-canonical cWW pairs | ||
| IL_3J2G_095 | Triple non-canonical cWW pairs | ||
| IL_3J2G_043 | Kink-turn | ||
| IL_3J2G_044 | No text annotation | ||
| IL_3J2G_045 | Isolated non-canonical cWW pair | ||
| IL_3J2G_046 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3J2G_088 | No text annotation | ||
| IL_3J2G_047 | Tandem non-canonical cWW pairs | ||
| IL_3J2G_048 | Isolated non-canonical cWW pair | ||
| IL_3J2G_049 | Minor groove platform | ||
| IL_3J2G_050 | Isolated cWH basepair | ||
| IL_3J2G_051 | Isolated non-canonical cWW pair | ||
| IL_3J2G_089 | Tandem non-canonical cWW pairs | ||
| IL_3J2G_052 | Minor groove platform | ||
| IL_3J2G_053 | Minor groove platform | ||
| IL_3J2G_090 | No text annotation | ||
| IL_3J2G_054 | Single stack bend | ||
| IL_3J2G_055 | Isolated non-canonical cWW pair | ||
| IL_3J2G_056 | Single bulged U | ||
| IL_3J2G_057 | Isolated cWS basepair | ||
| IL_3J2G_058 | Minor groove platform | ||
| IL_3J2G_059 | No text annotation | ||
| IL_3J2G_060 | Isolated non-canonical cWW pair | ||
| IL_3J2G_061 | Tandem non-canonical cWW pairs | ||
| IL_3J2G_062 | No text annotation | ||
| IL_3J2G_063 | Minor groove platform | ||
| IL_3J2G_064 | No text annotation | ||
| IL_3J2G_065 | No text annotation | ||
| IL_3J2G_096 | No text annotation | ||
| IL_3J2G_091 | No text annotation | ||
| IL_3J2G_066 | 180 degree turn | ||
| IL_3J2G_067 | Double sheared with non-canonical cWW | ||
| IL_3J2G_068 | Isolated cWH basepair | ||
| IL_3J2G_069 | No text annotation | ||
| IL_3J2G_070 | Isolated non-canonical cWW pair | ||
| IL_3J2G_071 | No text annotation | ||
| IL_3J2G_072 | No text annotation | ||
| IL_3J2G_073 | Isolated non-canonical cWW pair | ||
| IL_3J2G_097 | Partly complementary | ||
| IL_3J2G_092 | No text annotation | ||
| IL_3J2G_074 | No text annotation | ||
| IL_3J2G_098 | Isolated non-canonical cWW pair | ||
| IL_3J2G_075 | No text annotation | ||
| IL_3J2G_076 | Double sheared | ||
| IL_3J2G_077 | Isolated cWH basepair | ||
| IL_3J2G_078 | Triple sheared related | ||
| IL_3J2G_079 | Partly complementary | ||
| IL_3J2G_093 | No text annotation | ||
| IL_3J2G_080 | Single bulged A | ||
| IL_3J2G_099 | No text annotation | ||
| IL_3J2G_081 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J2G_011 | No text annotation | ||
| J3_3J2G_001 | No text annotation | ||
| J3_3J2G_012 | No text annotation | ||
| J3_3J2G_017 | No text annotation | ||
| J3_3J2G_018 | No text annotation | ||
| J3_3J2G_019 | No text annotation | ||
| J3_3J2G_013 | No text annotation | ||
| J3_3J2G_002 | No text annotation | ||
| J3_3J2G_003 | No text annotation | ||
| J3_3J2G_004 | No text annotation | ||
| J3_3J2G_020 | No text annotation | ||
| J3_3J2G_014 | No text annotation | ||
| J3_3J2G_005 | No text annotation | ||
| J3_3J2G_021 | No text annotation | ||
| J3_3J2G_015 | No text annotation | ||
| J3_3J2G_006 | No text annotation | ||
| J3_3J2G_022 | No text annotation | ||
| J3_3J2G_007 | No text annotation | ||
| J3_3J2G_010 | No text annotation | ||
| J3_3J2G_008 | No text annotation | ||
| J3_3J2G_016 | No text annotation | ||
| J4_3J2G_001 | No text annotation | ||
| J4_3J2G_002 | No text annotation | ||
| J4_3J2G_003 | No text annotation | ||
| J4_3J2G_004 | No text annotation | ||
| J5_3J2G_001 | No text annotation | ||
| J5_3J2G_002 | No text annotation | ||
| J5_3J2G_003 | No text annotation |
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