IL_3J2G_079

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GUAGG*CUUAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2G_079 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3758

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

3J2G|1|N|G|1435
3J2G|1|N|U|1436
3J2G|1|N|A|1437
3J2G|1|N|G|1438
3J2G|1|N|G|1439
*
3J2G|1|N|C|1462
3J2G|1|N|U|1463
3J2G|1|N|U|1464
3J2G|1|N|A|1465
3J2G|1|N|C|1466

Current chains

Chain N

16S rRNA

Nearby chains