IL_3J2G_097

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GUCAC*GAAGUC

Length

11 nucleotides

Bulged bases

3J2G|1|N|A|1493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2G_097 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.5201

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

3J2G|1|N|G|1405
3J2G|1|N|U|1406
3J2G|1|N|C|1407
3J2G|1|N|A|1408
3J2G|1|N|C|1409
*
3J2G|1|N|G|1491
3J2G|1|N|A|1492
3J2G|1|N|A|1493
3J2G|1|N|G|1494
3J2G|1|N|U|1495
3J2G|1|N|C|1496

Current chains

Chain N

16S rRNA

Nearby chains