IL_3J2H_090

3D structure

PDB id

3J2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

18.8 Å

Loop

Sequence

GGAC*GC

Length

6 nucleotides

Bulged bases

3J2H|1|N|G|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2H_090 not in the Motif Atlas

Geometric match to IL_5J7L_004

Geometric discrepancy: 0.2885

The information below is about IL_5J7L_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

3J2H|1|N|G|203
3J2H|1|N|G|204
3J2H|1|N|A|205
3J2H|1|N|C|206
*
3J2H|1|N|G|213
3J2H|1|N|C|214

Current chains

Chain N

16S rRNA

Nearby chains