3J2H Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J2H_033 | No text annotation | ||
| HL_3J2H_001 | No text annotation | ||
| HL_3J2H_002 | No text annotation | ||
| HL_3J2H_034 | No text annotation | ||
| HL_3J2H_003 | GNRA | ||
| HL_3J2H_004 | GNRA | ||
| HL_3J2H_005 | No text annotation | ||
| HL_3J2H_006 | No text annotation | ||
| HL_3J2H_038 | GNRA related | ||
| HL_3J2H_007 | GNRA | ||
| HL_3J2H_008 | No text annotation | ||
| HL_3J2H_009 | UNCG | ||
| HL_3J2H_010 | GNRA | ||
| HL_3J2H_011 | UNCG | ||
| HL_3J2H_012 | No text annotation | ||
| HL_3J2H_039 | No text annotation | ||
| HL_3J2H_013 | Mini UNCG | ||
| HL_3J2H_014 | GNRA-like with tWH | ||
| HL_3J2H_015 | No text annotation | ||
| HL_3J2H_016 | GNRA | ||
| HL_3J2H_035 | No text annotation | ||
| HL_3J2H_017 | No text annotation | ||
| HL_3J2H_018 | No text annotation | ||
| HL_3J2H_019 | GNRA | ||
| HL_3J2H_020 | GNRA | ||
| HL_3J2H_036 | No text annotation | ||
| HL_3J2H_021 | No text annotation | ||
| HL_3J2H_022 | GNRA | ||
| HL_3J2H_023 | No text annotation | ||
| HL_3J2H_024 | GNRA | ||
| HL_3J2H_025 | No text annotation | ||
| HL_3J2H_026 | No text annotation | ||
| HL_3J2H_027 | GNRA | ||
| HL_3J2H_028 | GNRA | ||
| HL_3J2H_029 | T-loop with 3 stacked bulged bases | ||
| HL_3J2H_037 | No text annotation | ||
| HL_3J2H_030 | No text annotation | ||
| HL_3J2H_031 | UNCG | ||
| HL_3J2H_032 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J2H_001 | Isolated non-canonical cWW pair | ||
| IL_3J2H_074 | Single bulged G | ||
| IL_3J2H_002 | Single bulged A | ||
| IL_3J2H_003 | No text annotation | ||
| IL_3J2H_004 | Minor groove platform | ||
| IL_3J2H_005 | Isolated non-canonical cWW pair | ||
| IL_3J2H_006 | Multiple bulged bases | ||
| IL_3J2H_007 | Minor groove platform with extra cWW | ||
| IL_3J2H_008 | Minor groove platform | ||
| IL_3J2H_075 | No text annotation | ||
| IL_3J2H_009 | No text annotation | ||
| IL_3J2H_010 | No text annotation | ||
| IL_3J2H_011 | Isolated cWS basepair | ||
| IL_3J2H_012 | Isolated cWH basepair | ||
| IL_3J2H_013 | tWH-tWH-tHW-tHW | ||
| IL_3J2H_014 | No text annotation | ||
| IL_3J2H_076 | No text annotation | ||
| IL_3J2H_015 | No text annotation | ||
| IL_3J2H_090 | Minor groove platform | ||
| IL_3J2H_016 | Kink-turn with non-sequential stacking | ||
| IL_3J2H_077 | No text annotation | ||
| IL_3J2H_078 | No text annotation | ||
| IL_3J2H_017 | No text annotation | ||
| IL_3J2H_018 | No text annotation | ||
| IL_3J2H_019 | Single bulged U | ||
| IL_3J2H_020 | C-loop | ||
| IL_3J2H_021 | Single bulged G | ||
| IL_3J2H_022 | Isolated non-canonical cWW pair | ||
| IL_3J2H_023 | No text annotation | ||
| IL_3J2H_079 | No text annotation | ||
| IL_3J2H_024 | No text annotation | ||
| IL_3J2H_025 | tSH-tHW-tWW | ||
| IL_3J2H_026 | No text annotation | ||
| IL_3J2H_027 | SSU/LSU pseudoknot | ||
| IL_3J2H_028 | No text annotation | ||
| IL_3J2H_029 | No text annotation | ||
| IL_3J2H_030 | tSH-tHW-tHS | ||
| IL_3J2H_031 | Major groove platform | ||
| IL_3J2H_032 | Major groove minor groove platform; mini C-loop | ||
| IL_3J2H_033 | Isolated non-canonical cWW pair | ||
| IL_3J2H_034 | No text annotation | ||
| IL_3J2H_080 | No text annotation | ||
| IL_3J2H_091 | No text annotation | ||
| IL_3J2H_035 | Major groove platform; stack outside cWW | ||
| IL_3J2H_036 | Single stack bend | ||
| IL_3J2H_037 | No text annotation | ||
| IL_3J2H_038 | Tandem non-canonical cWW pairs | ||
| IL_3J2H_039 | Triple non-canonical cWW pairs | ||
| IL_3J2H_040 | Kink-turn | ||
| IL_3J2H_041 | No text annotation | ||
| IL_3J2H_081 | No text annotation | ||
| IL_3J2H_092 | No text annotation | ||
| IL_3J2H_042 | tSH-tHW-tHS | ||
| IL_3J2H_043 | Isolated non-canonical cWW pair | ||
| IL_3J2H_082 | No text annotation | ||
| IL_3J2H_044 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_3J2H_045 | Decoding loop related | ||
| IL_3J2H_046 | Minor groove platform | ||
| IL_3J2H_047 | No text annotation | ||
| IL_3J2H_048 | No text annotation | ||
| IL_3J2H_049 | Isolated non-canonical cWW pair | ||
| IL_3J2H_093 | Minor groove platform | ||
| IL_3J2H_083 | No text annotation | ||
| IL_3J2H_050 | Single stack bend | ||
| IL_3J2H_051 | Tandem non-canonical cWW pairs | ||
| IL_3J2H_052 | Single bulged U | ||
| IL_3J2H_053 | Isolated cWS basepair | ||
| IL_3J2H_054 | Minor groove platform | ||
| IL_3J2H_055 | No text annotation | ||
| IL_3J2H_084 | Isolated non-canonical cWW pair | ||
| IL_3J2H_056 | No text annotation | ||
| IL_3J2H_085 | No text annotation | ||
| IL_3J2H_057 | Minor groove platform | ||
| IL_3J2H_086 | No text annotation | ||
| IL_3J2H_058 | No text annotation | ||
| IL_3J2H_094 | No text annotation | ||
| IL_3J2H_087 | No text annotation | ||
| IL_3J2H_059 | 180 degree turn | ||
| IL_3J2H_060 | No text annotation | ||
| IL_3J2H_061 | Isolated cWH basepair | ||
| IL_3J2H_062 | No text annotation | ||
| IL_3J2H_063 | No text annotation | ||
| IL_3J2H_064 | No text annotation | ||
| IL_3J2H_065 | Isolated non-canonical cWW pair | ||
| IL_3J2H_088 | Isolated non-canonical cWW pair | ||
| IL_3J2H_066 | No text annotation | ||
| IL_3J2H_095 | Isolated non-canonical cWW pair | ||
| IL_3J2H_067 | No text annotation | ||
| IL_3J2H_068 | Double sheared | ||
| IL_3J2H_069 | Isolated non-canonical cWW pair | ||
| IL_3J2H_070 | No text annotation | ||
| IL_3J2H_089 | Triple sheared related | ||
| IL_3J2H_071 | No text annotation | ||
| IL_3J2H_096 | Single bulged A | ||
| IL_3J2H_072 | Minor groove platform with extra cWW | ||
| IL_3J2H_073 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3J2H_013 | No text annotation | ||
| J3_3J2H_010 | No text annotation | ||
| J3_3J2H_014 | No text annotation | ||
| J3_3J2H_011 | No text annotation | ||
| J3_3J2H_015 | No text annotation | ||
| J3_3J2H_001 | No text annotation | ||
| J3_3J2H_002 | No text annotation | ||
| J3_3J2H_003 | No text annotation | ||
| J3_3J2H_016 | No text annotation | ||
| J3_3J2H_004 | No text annotation | ||
| J3_3J2H_017 | No text annotation | ||
| J3_3J2H_005 | No text annotation | ||
| J3_3J2H_018 | No text annotation | ||
| J3_3J2H_006 | No text annotation | ||
| J3_3J2H_019 | No text annotation | ||
| J3_3J2H_020 | No text annotation | ||
| J3_3J2H_012 | No text annotation | ||
| J3_3J2H_007 | No text annotation | ||
| J3_3J2H_021 | No text annotation | ||
| J3_3J2H_008 | No text annotation | ||
| J3_3J2H_022 | No text annotation | ||
| J4_3J2H_001 | No text annotation | ||
| J4_3J2H_002 | No text annotation | ||
| J4_3J2H_004 | No text annotation | ||
| J4_3J2H_003 | No text annotation | ||
| J5_3J2H_001 | No text annotation | ||
| J5_3J2H_002 | No text annotation | ||
| J5_3J2H_003 | No text annotation |
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