IL_3J45_005

3D structure

PDB id

3J45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a non-translocating SecY protein channel with the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J45_005 not in the Motif Atlas

Geometric match to IL_5J7L_317

Geometric discrepancy: 0.1685

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

3J45|1|4|U|1864
3J45|1|4|U|1865
3J45|1|4|A|1866
3J45|1|4|G|1867
*
3J45|1|4|C|1874
3J45|1|4|G|1875
3J45|1|4|A|1876
3J45|1|4|A|1877
3J45|1|4|G|1878

Current chains

Chain 4

23S ribosomal RNA

Nearby chains