IL_3J45_013

3D structure

PDB id

3J45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a non-translocating SecY protein channel with the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUACC

Length

37 nucleotides

Bulged bases

3J45|1|5|C|2129, 3J45|1|5|U|2130, 3J45|1|5|U|2132, 3J45|1|5|G|2157, 3J45|1|5|A|2158, 3J45|1|5|A|2163

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J45|1|5|G|2123
3J45|1|5|G|2124
3J45|1|5|G|2125
3J45|1|5|A|2126
3J45|1|5|G|2127
3J45|1|5|G|2128
3J45|1|5|C|2129
3J45|1|5|U|2130
3J45|1|5|U|2131
3J45|1|5|U|2132
3J45|1|5|G|2133
3J45|1|5|A|2134
3J45|1|5|A|2135
3J45|1|5|G|2136
3J45|1|5|U|2137
*
3J45|1|5|A|2154
3J45|1|5|U|2155
3J45|1|5|G|2156
3J45|1|5|G|2157
3J45|1|5|A|2158
3J45|1|5|G|2159
3J45|1|5|C|2160
3J45|1|5|C|2161
3J45|1|5|G|2162
3J45|1|5|A|2163
3J45|1|5|C|2164
3J45|1|5|C|2165
3J45|1|5|U|2166
3J45|1|5|U|2167
3J45|1|5|G|2168
3J45|1|5|A|2169
3J45|1|5|A|2170
3J45|1|5|A|2171
3J45|1|5|U|2172
3J45|1|5|A|2173
3J45|1|5|C|2174
3J45|1|5|C|2175

Current chains

Chain 5

23S ribosomal RNA

Nearby chains