IL_3J46_006

3D structure

PDB id

3J46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SecY protein translocation channel in action

Experimental method

ELECTRON MICROSCOPY

Resolution

10.1 Å

Loop

Sequence

UUG*UAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J46_006 not in the Motif Atlas

Geometric match to IL_5D0B_001

Geometric discrepancy: 0.2038

The information below is about IL_5D0B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J46|1|4|U|2105
3J46|1|4|U|2106
3J46|1|4|G|2107
*
3J46|1|4|U|2182
3J46|1|4|A|2183
3J46|1|4|A|2184

Current chains

Chain 4

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L1