IL_3J46_008

3D structure

PDB id

3J46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SecY protein translocation channel in action

Experimental method

ELECTRON MICROSCOPY

Resolution

10.1 Å

Loop

Sequence

GUGUAGGAUAGGU*ACCC

Length

17 nucleotides

Bulged bases

3J46|1|4|U|2111, 3J46|1|4|G|2116, 3J46|1|4|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J46|1|4|G|2110
3J46|1|4|U|2111
3J46|1|4|G|2112
3J46|1|4|U|2113
3J46|1|4|A|2114
3J46|1|4|G|2115
3J46|1|4|G|2116
3J46|1|4|A|2117
3J46|1|4|U|2118
3J46|1|4|A|2119
3J46|1|4|G|2120
3J46|1|4|G|2121
3J46|1|4|U|2122
*
3J46|1|4|A|2176
3J46|1|4|C|2177
3J46|1|4|C|2178
3J46|1|4|C|2179

Current chains

Chain 4

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L1