IL_3J46_009

3D structure

PDB id

3J46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SecY protein translocation channel in action

Experimental method

ELECTRON MICROSCOPY

Resolution

10.1 Å

Loop

Sequence

GGAGGCUUUGAAG*UGGAGCCGACCUUGAAAUAC

Length

33 nucleotides

Bulged bases

3J46|1|4|A|2163

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J46|1|4|G|2124
3J46|1|4|G|2125
3J46|1|4|A|2126
3J46|1|4|G|2127
3J46|1|4|G|2128
3J46|1|4|C|2129
3J46|1|4|U|2130
3J46|1|4|U|2131
3J46|1|4|U|2132
3J46|1|4|G|2133
3J46|1|4|A|2134
3J46|1|4|A|2135
3J46|1|4|G|2136
*
3J46|1|4|U|2155
3J46|1|4|G|2156
3J46|1|4|G|2157
3J46|1|4|A|2158
3J46|1|4|G|2159
3J46|1|4|C|2160
3J46|1|4|C|2161
3J46|1|4|G|2162
3J46|1|4|A|2163
3J46|1|4|C|2164
3J46|1|4|C|2165
3J46|1|4|U|2166
3J46|1|4|U|2167
3J46|1|4|G|2168
3J46|1|4|A|2169
3J46|1|4|A|2170
3J46|1|4|A|2171
3J46|1|4|U|2172
3J46|1|4|A|2173
3J46|1|4|C|2174

Current chains

Chain 4

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L1