IL_3J5L_017
3D structure
- PDB id
- 3J5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli 50S subunit with ErmBL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 3J5L|1|A|G|801, 3J5L|1|A|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J5L_017 not in the Motif Atlas
- Geometric match to IL_5J7L_260
- Geometric discrepancy: 0.0616
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J5L|1|A|G|674
3J5L|1|A|A|675
3J5L|1|A|A|676
3J5L|1|A|A|677
3J5L|1|A|C|678
*
3J5L|1|A|G|799
3J5L|1|A|A|800
3J5L|1|A|G|801
3J5L|1|A|A|802
3J5L|1|A|U|803
3J5L|1|A|A|804
3J5L|1|A|G|805
3J5L|1|A|C|806
Current chains
- Chain A
- 23S ribsomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
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