Motif IL_54041.2 Version IL_54041.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_024 | 4V9F | 0.2563 | 2 | tHW-tHW cross-strand stack | 0 | LSU rRNA | G | 892 | C | 893 | A | 895 | C | 896 | A | 897 | C | 899 | * | G | 765 | A | 766 | A | 767 | U | 768 | C | 769 | cWW | tWH | tWH | cWW | |
| 2 | IL_8CRE_030 | 8CRE | 0.1882 | 2 | 1 | LSU rRNA | C | 927 | U | 928 | G | 930 | U | 931 | A | 932 | C | 934 | * | G | 801 | A | 802 | A | 803 | A | 804 | G | 805 | cWW | ntHH | tWH | cWW | ||
| 3 | IL_8P9A_256 | 8P9A | 0.1850 | 2 | tHW-tHW cross-strand stack (H) | AR | LSU rRNA | C | 931 | U | 932 | G | 934 | U | 935 | A | 936 | C | 938 | * | G | 805 | A | 806 | A | 807 | A | 808 | G | 809 | cWW | ntHH | tWH | cWW | |
| 4 | IL_4WF9_021 | 4WF9 | 0.1309 | 2 | tHW-tHW cross-strand stack | X | LSU rRNA | G | 844 | A | 845 | A | 847 | U | 848 | A | 849 | C | 851 | * | G | 719 | A | 720 | A | 721 | A | 722 | C | 723 | cWW | ntWW | ntWW | tWH | cWW |
| 5 | IL_7A0S_015 | 7A0S | 0.1327 | 2 | tHW-tHW cross-strand stack | X | LSU rRNA | G | 812 | A | 813 | A | 815 | U | 816 | A | 817 | C | 819 | * | G | 687 | A | 688 | A | 689 | A | 690 | C | 691 | cWW | ntWW | tWH | cWW | |
| 6 | IL_5J7L_260 | 5J7L | 0.0000 | 2 | tHW-tHW cross-strand stack | DA | LSU rRNA | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | * | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | cWW | tWW | tWH | tWH | cWW |
| 7 | IL_9DFE_016 | 9DFE | 0.0961 | 2 | 1A | LSU rRNA | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | * | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | cWW | tWW | tWH | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAUAGC*GAAAC | 4 |
| CUAGUAGC*GAAAG | 2 |
| GCAACAGC*GAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAUAG*AAA | 4 |
| UAGUAG*AAA | 2 |
| CAACAG*AAU | 1 |
- Annotations
-
- tHW-tHW cross-strand stack (4)
- (2)
- tHW-tHW cross-strand stack (H) (1)
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Heat map statistics
- Min 0.06 | Avg 0.16 | Max 0.30
Coloring options: