IL_3J5L_055

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

3J5L|1|A|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_055 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0648

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J5L|1|A|C|1437
3J5L|1|A|U|1438
3J5L|1|A|A|1439
3J5L|1|A|U|1440
*
3J5L|1|A|A|1551
3J5L|1|A|A|1552
3J5L|1|A|A|1553
3J5L|1|A|U|1554
3J5L|1|A|G|1555

Current chains

Chain A

23S ribsomal RNA

Nearby chains