IL_3J5L_060

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UUU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUU,AAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_060 not in the Motif Atlas

Geometric match to IL_4KR9_001

Geometric discrepancy: 0.1551

The information below is about IL_4KR9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

3J5L|1|A|U|1485
3J5L|1|A|U|1486
3J5L|1|A|U|1487
*
3J5L|1|A|A|1502
3J5L|1|A|A|1503
3J5L|1|A|A|1504

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain C

50S ribosomal protein L2