IL_3J5L_062

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_062 not in the Motif Atlas

Homologous match to IL_5J7L_303

Geometric discrepancy: 0.0693

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

3J5L|1|A|C|1526
3J5L|1|A|G|1527
3J5L|1|A|A|1528
3J5L|1|A|G|1529
*
3J5L|1|A|U|1542
3J5L|1|A|G|1543
3J5L|1|A|A|1544
3J5L|1|A|A|1545
3J5L|1|A|G|1546

Current chains

Chain A

23S ribsomal RNA

Nearby chains