Motif IL_23774.1 Version IL_23774.1 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-3 | 2-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2R8S_006 | 2R8S | 0.3247 | 1 | UAA/GAN variation | R | P4-P6 RNA RIBOZYME DOMAIN | C | 216 | C | 217 | A | 218 | A | 219 | G | 220 | * | U | 253 | G | 254 | A | 256 | G | 257 | cWW | tSH | tHS | cWW | |
| 2 | IL_8P9A_251 | 8P9A | 0.3045 | 0 | UAA/GAN (H) | AR | LSU rRNA | U | 741 | G | 742 | C | 743 | A | 744 | C | 745 | * | G | 725 | G | 726 | G | 727 | G | 728 | cWW | ntSH | tHS | cWW | |
| 3 | IL_8CRE_025 | 8CRE | 0.3115 | 0 | 1 | LSU rRNA | U | 737 | G | 738 | C | 739 | A | 740 | C | 741 | * | G | 723 | G | 724 | G | 725 | G | 726 | cWW | ntSH | tHS | cWW | ||
| 4 | IL_8XZL_001 | 8XZL | 0.2745 | 0 | A | RNA (53-MER) | U | 6 | G | 7 | U | 8 | A | 9 | C | 10 | * | G | 45 | G | 46 | A | 47 | G | 48 | cWW | tSH | tHS | cWW | ||
| 5 | IL_5J7L_303 | 5J7L | 0.2742 | 0 | UAA/GAN variation | DA | LSU rRNA | U | 1542 | G | 1543 | A | 1544 | A | 1545 | G | 1546 | * | C | 1526 | G | 1527 | A | 1528 | G | 1529 | cWW | ntSH | tHS | cWW | |
| 6 | IL_9DFE_059 | 9DFE | 0.2416 | 0 | 1A | LSU rRNA | A | 1469 | G | 1470 | A | 1471 | A | 1472 | G | 1473 | * | U | 1518 | G | 1519 | G | 1520 | U | 1523 | cWW | tHS | cWW | |||
| 7 | IL_4V9F_094 | 4V9F | 0.0000 | 1 | UAA/GAN | 0 | LSU rRNA | G | 2754 | G | 2755 | U | 2756 | A | 2757 | G | 2758 | * | U | 2724 | G | 2725 | A | 2727 | C | 2728 | cWW | tHS | cWW | ||
| 8 | IL_5J7L_348 | 5J7L | 0.5919 | 1 | DA | LSU rRNA | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | * | U | 2687 | G | 2688 | U | 2690 | C | 2691 | cWW | tHS | cWW | |||
| 9 | IL_4WF9_102 | 4WF9 | 0.8716 | 1 | X | LSU rRNA | G | 2745 | G | 2746 | U | 2747 | A | 2748 | G | 2749 | * | U | 2714 | G | 2715 | A | 2717 | C | 2718 | cWW | tHS | cWW | |||
| 10 | IL_9DFE_104 | 9DFE | 0.8453 | 1 | 1A | LSU rRNA | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | * | U | 2687 | U | 2688 | C | 2690 | C | 2691 | cWW | tHS | cWW | |||
| 11 | IL_7A0S_096 | 7A0S | 0.9137 | 1 | X | LSU rRNA | G | 2698 | G | 2699 | U | 2700 | A | 2701 | G | 2702 | * | U | 2666 | C | 2667 | C | 2669 | C | 2670 | cWW | ncSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCAC*GGGG | 2 |
| GGUAG*UGUAC | 2 |
| CCAAG*UGCAG | 1 |
| UGUAC*GGAG | 1 |
| UGAAG*CGAG | 1 |
| AGAAG*UGGU | 1 |
| GGUAG*UGUUC | 1 |
| GGUAG*UUUCC | 1 |
| GGUAG*UCUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA*GG | 2 |
| GUA*GUA | 2 |
| CAA*GCA | 1 |
| GUA*GA | 1 |
| GAA*GA | 1 |
| GAA*GG | 1 |
| GUA*GUU | 1 |
| GUA*UUC | 1 |
| GUA*CUC | 1 |
- Annotations
-
- (7)
- UAA/GAN variation (2)
- UAA/GAN (1)
- UAA/GAN (H) (1)
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.52 | Max 0.99
Coloring options: