IL_3J5L_073

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

3J5L|1|A|C|1838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_073 not in the Motif Atlas

Homologous match to IL_5J7L_314

Geometric discrepancy: 0.0988

The information below is about IL_5J7L_314

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

3J5L|1|A|C|1837
3J5L|1|A|C|1838
3J5L|1|A|G|1839
3J5L|1|A|G|1840
*
3J5L|1|A|C|1902
3J5L|1|A|G|1903

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain C

50S ribosomal protein L2