IL_3J5L_075

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

3J5L|1|A|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_075 not in the Motif Atlas

Homologous match to IL_7RQB_073

Geometric discrepancy: 0.3001

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

3J5L|1|A|G|1846
3J5L|1|A|A|1847
3J5L|1|A|A|1848
3J5L|1|A|G|1849
*
3J5L|1|A|C|1893
3J5L|1|A|C|1894

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain C

50S ribosomal protein L2