IL_3J5L_077

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_077 not in the Motif Atlas

Geometric match to IL_5J7L_318

Geometric discrepancy: 0.0848

The information below is about IL_5J7L_318

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

3J5L|1|A|G|1933
3J5L|1|A|C|1934
*
3J5L|1|A|G|1964
3J5L|1|A|C|1965
3J5L|1|A|A|1966
3J5L|1|A|C|1967

Current chains

Chain A

23S ribsomal RNA

Nearby chains