IL_3J5L_082

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

3J5L|1|A|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_082 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0849

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

3J5L|1|A|A|2070
3J5L|1|A|A|2071
*
3J5L|1|A|U|2438
3J5L|1|A|A|2439
3J5L|1|A|C|2440
3J5L|1|A|U|2441

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain 6

Erythromycin resistance leader peptide

Chain 7

5'-R(*CP*CP*A)-3'

Chain C

50S ribosomal protein L2