IL_3J5L_120
3D structure
- PDB id
- 3J5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli 50S subunit with ErmBL nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GAAGG*UCGGC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J5L_120 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.283
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
3J5L|1|A|G|1038
3J5L|1|A|A|1039
3J5L|1|A|A|1040
3J5L|1|A|G|1041
3J5L|1|A|G|1042
*
3J5L|1|A|U|1113
3J5L|1|A|C|1114
3J5L|1|A|G|1115
3J5L|1|A|G|1116
3J5L|1|A|C|1117
Current chains
- Chain A
- 23S ribsomal RNA
Nearby chains
- Chain G
- 50S ribosomal protein L6
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
Coloring options: