IL_3J5S_003

3D structure

PDB id

3J5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics

Experimental method

ELECTRON MICROSCOPY

Resolution

7.5 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5S_003 not in the Motif Atlas

Homologous match to IL_4WF9_072

Geometric discrepancy: 0.5774

The information below is about IL_4WF9_072

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

3J5S|1|A|G|1846
3J5S|1|A|A|1847
3J5S|1|A|A|1848
3J5S|1|A|G|1849
*
3J5S|1|A|C|1893
3J5S|1|A|C|1894

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Energy-dependent translational throttle A (EttA)