3D structure

PDB id
3J5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics
Experimental method
ELECTRON MICROSCOPY
Resolution
7.5 Å

Loop

Sequence
CCU*AUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J5S_007 not in the Motif Atlas
Geometric match to IL_3GM7_006
Geometric discrepancy: 0.183
The information below is about IL_3GM7_006
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

3J5S|1|A|C|2103
3J5S|1|A|C|2104
3J5S|1|A|U|2105
*
3J5S|1|A|A|2184
3J5S|1|A|U|2185
3J5S|1|A|G|2186

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L1

Coloring options:


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