IL_3J6B_014

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAG*CAGAUAGC

Length

13 nucleotides

Bulged bases

3J6B|1|A|G|692, 3J6B|1|A|G|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_014 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1025

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

3J6B|1|A|G|583
3J6B|1|A|A|584
3J6B|1|A|A|585
3J6B|1|A|A|586
3J6B|1|A|G|587
*
3J6B|1|A|C|690
3J6B|1|A|A|691
3J6B|1|A|G|692
3J6B|1|A|A|693
3J6B|1|A|U|694
3J6B|1|A|A|695
3J6B|1|A|G|696
3J6B|1|A|C|697

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain D

54S ribosomal protein YmL6, mitochondrial

Chain J

54S ribosomal protein L10, mitochondrial