IL_3J6B_020

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAAU*AUAA

Length

9 nucleotides

Bulged bases

3J6B|1|A|A|736

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_020 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.2604

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J6B|1|A|U|734
3J6B|1|A|A|735
3J6B|1|A|A|736
3J6B|1|A|A|737
3J6B|1|A|U|738
*
3J6B|1|A|A|858
3J6B|1|A|U|859
3J6B|1|A|A|860
3J6B|1|A|A|861

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 7

54S ribosomal protein IMG2, mitochondrial

Chain U

54S ribosomal protein L33, mitochondrial