IL_3J6B_023

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_023 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.1845

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

3J6B|1|A|C|785
3J6B|1|A|A|786
*
3J6B|1|A|U|839
3J6B|1|A|C|840
3J6B|1|A|G|841

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain E

54S ribosomal protein L7, mitochondrial

Chain K

54S ribosomal protein L16, mitochondrial

Chain c

54S ribosomal protein L31, mitochondrial