IL_3J6B_029
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAGA*UCU
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6B_029 not in the Motif Atlas
- Geometric match to IL_5TBW_091
- Geometric discrepancy: 0.2745
- The information below is about IL_5TBW_091
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.5
- Basepair signature
- cWW-cHS-cWW-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J6B|1|A|A|919
3J6B|1|A|A|920
3J6B|1|A|G|921
3J6B|1|A|A|922
*
3J6B|1|A|U|1179
3J6B|1|A|C|1180
3J6B|1|A|U|1181
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 4
- 54S ribosomal protein L51, mitochondrial
- Chain N
- 54S ribosomal protein L49, mitochondrial
- Chain O
- 54S ribosomal protein L22, mitochondrial
- Chain U
- 54S ribosomal protein L33, mitochondrial
- Chain a
- 54S ribosomal protein L20, mitochondrial
Coloring options: