IL_3J6B_032

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAU*AUAG

Length

7 nucleotides

Bulged bases

3J6B|1|A|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_032 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.2219

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

3J6B|1|A|C|1230
3J6B|1|A|A|1231
3J6B|1|A|U|1232
*
3J6B|1|A|A|1280
3J6B|1|A|U|1281
3J6B|1|A|A|1282
3J6B|1|A|G|1283

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain 4

54S ribosomal protein L51, mitochondrial

Chain D

54S ribosomal protein YmL6, mitochondrial

Chain J

54S ribosomal protein L10, mitochondrial