IL_3J6B_062

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAG*CU

Length

6 nucleotides

Bulged bases

3J6B|1|A|U|1989, 3J6B|1|A|A|1990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_062 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.2422

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

3J6B|1|A|A|1988
3J6B|1|A|U|1989
3J6B|1|A|A|1990
3J6B|1|A|G|1991
*
3J6B|1|A|C|2256
3J6B|1|A|U|2257

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

54S ribosomal protein RML2, mitochondrial

Chain G

54S ribosomal protein L50, mitochondrial

Chain S

54S ribosomal protein L24, mitochondrial